popgenmethods / SINGER

Sampling and inference of genealogies with recombination
MIT License
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Auto-debug issues occurred with the custom VCF input file #12

Open kirifuji-nagisa opened 7 months ago

kirifuji-nagisa commented 7 months ago

Hi, @YunDeng98, I have been working on a script to convert multiple sequence alignment results into a VCF file. When I run the following command:

~/singer_master -Ne 1e4 -m 1.25e-8 -vcf test -output test -start 10810 -end 200430 -n 1000 -thin 10

The error message says:

singer: RSP_smc.cpp:359: double RSP_smc::choose_time(double, double): Assertion `mt >= lb and mt <= ub' failed.

singer: approx_BSP.cpp:159: void approx_BSP::null_emit(double, Node_ptr): Assertion `ws > 0' failed.

Could you please provide some insight into what might be causing these errors? Any help would be greatly appreciated.

Thank you!