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popgenmethods / momi2

Infer demographic history with the Moran model
GNU General Public License v3.0
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plotting issue #44

Closed XuexueLiu closed 2 years ago

XuexueLiu commented 3 years ago

Hello Jack I follow the tutorial, but has a problem for plotting:

plot the model

...: fig = momi.DemographyPlot(no_pulse_model, ["YRI", "CHB"],
...:                           figsize=(6,8), linthreshy=1e5,
...:                           major_yticks=yticks,
...:                           pulse_color_bounds=(0,.25))

/disk/anaconda3/lib/python3.8/site-packages/momi/demo_plotter.py:69: MatplotlibDeprecationWarning: The 'linthreshy' parameter of init() has been renamed 'linthresh' since Matplotlib 3.3; support for the old name will be dropped two minor releases later. self.ax.set_yscale('symlog', linthreshy=linthreshy)

is there any solutions for this? thankyou Xue

jackkamm commented 2 years ago

Thank you for reporting this, and sorry for the very delayed response.

I've updated the master branch to use the renamed matplotlib parameter internally, and this fix will be included in the next momi2 release, coming soon.