The estimated missing allele probability requires 2 alleles per population, and will crash if a population only has 1 allele.
When this happens, the error message is cryptic, and it is not clear to the user what is going on.
To get around the issue, a population with only 1 allele can be set as non-ascertained, then this missing allele probability won't be computed. Alternatively, we could allow the user to manually specify the missing allele probability, or to specify that the dataset doesn't have any missing data, but I don't think we've exposed any such option to the user.
The estimated missing allele probability requires 2 alleles per population, and will crash if a population only has 1 allele.
When this happens, the error message is cryptic, and it is not clear to the user what is going on.
To get around the issue, a population with only 1 allele can be set as non-ascertained, then this missing allele probability won't be computed. Alternatively, we could allow the user to manually specify the missing allele probability, or to specify that the dataset doesn't have any missing data, but I don't think we've exposed any such option to the user.
See also: https://github.com/popgenmethods/momi2/issues/53