popgenmethods / momi2

Infer demographic history with the Moran model
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The query for momo.read_vcf whether need so many memory (1.2t)? Is it normal? #70

Open baiwenhuim opened 1 year ago

baiwenhuim commented 1 year ago

I use this script to read the file of VCF and generate data. But when I ran it for two weeks, it still not stop and already use 1.2t memory. So is it normal? Who can help me to get a true result or guide me to re-correct it.

Script: python -m momi.read_vcf ./momi2/Cn.group.chr1.vcf.gz ./momi2/group.txt ./Cn.group.chr1.snpAlleleCounts.gz --bed ./momi2/chr1.bed --no_aa

image

And this is part of the file of input: image

If anyone can help me, I am very grateful for this, Thanks.