popgenmethods / smcpp

SMC++ infers population history from whole-genome sequence data.
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Composite likelihood: input into estimate #217

Open elizeng opened 1 year ago

elizeng commented 1 year ago

From #31, where there are 10 distinguished individuals, and 29 chromosomes.

Would the input into estimate be all 290 input files? Or should they be input into estimate by chromosomes.

My guess would be that all 290 output files from vcf2smc should go into estimate, but just wanted to ask for advice on here as well to confirm.

Cheers, Elize