Hi, I am working on a haploid genome and want to use SMC++ . Yet with the error : Expected a diploid genotype at position 337 for individual MaG-1 but found. My snp is haploid type with only 0 or 1.
chr1 214173 . G A 1615.72 PASS . GT:AD:DP:FT:GQ:PL 0:3,0:3:PASS:99:0,121
Is there some way to run smc++ on haploid data? Thanks.
Hi, I am working on a haploid genome and want to use SMC++ . Yet with the error : Expected a diploid genotype at position 337 for individual MaG-1 but found. My snp is haploid type with only 0 or 1.
chr1 214173 . G A 1615.72 PASS . GT:AD:DP:FT:GQ:PL 0:3,0:3:PASS:99:0,121
Is there some way to run smc++ on haploid data? Thanks.
Best, Shuangyang