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popgenmethods / smcpp

SMC++ infers population history from whole-genome sequence data.
GNU General Public License v3.0
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how to use 'plot.py' to place the legend outside the top right corner of the plot frame or plot the resulting .json files in R? #224

Open yzliu01 opened 1 year ago

yzliu01 commented 1 year ago

Hi, I could not make appropriate changes in the plot.py so that I could place the legend outside the top right corner of the plot and better present the species names. Expected visualization like Example 2 on this page: https://www.statology.org/matplotlib-legend-position/, which seems to use different a module as in plot.py. Alternatively, when I try to plot the resulting .json files in R I got errors? Like: Error in fromJSON(file = "model.final.json") : not all data was parsed (576 chars were parsed out of a total of 1354 chars). Appreciate any advice. Thanks a lot.

tcztzy commented 9 months ago

You may use --csv to export the plotting points.

https://github.com/popgenmethods/smcpp/blob/8bdecdfa1064c930a620869a4ff53f21609b237c/smcpp/commands/plot.py#L31-L36