Here's the error below. Has anyone seen this before?
Thanks a lot!
My error:
Traceback (most recent call last):
File "/sw/bioinfo/SMC++/1.15.2/rackham/bin/smc++", line 8, in
sys.exit(main())
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/frontend/console.py", line 26, in main
cmds[args.command].main(args)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/commands/split.py", line 44, in main
analysis = SplitAnalysis(args.data, args)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/analysis/split.py", line 23, in init
self._init_inference_manager(args.polarization_error, hs)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/analysis/base.py", line 108, in _init_inference_manager
im.model = self._model
File "smcpp/_smcpp.pyx", line 198, in smcpp._smcpp.PyInferenceManager.model.set
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/observe.py", line 19, in
f(self, *args, **kwargs)
File "smcpp/_smcpp.pyx", line 328, in smcpp._smcpp.PyOnePopInferenceManager.update
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/model.py", line 297, in for_pop
assert self.model1.N0 == self.model2.N0
AssertionError
Hi,
I suddenly get an error when trying to estimate the split between 2 populations and I didn't have this error before when using the following command:
smc++ split -o split/NovZ_NE NovZ/NovZ.final.json NE/NE.final.json results_divergence_NovZ_NE/.smcgz -c 100000
I have this error using either v1.15.2 or 1.15.4
Here's the error below. Has anyone seen this before?
Thanks a lot!
My error:
Traceback (most recent call last): File "/sw/bioinfo/SMC++/1.15.2/rackham/bin/smc++", line 8, in
sys.exit(main())
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/frontend/console.py", line 26, in main
cmds[args.command].main(args)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/commands/split.py", line 44, in main
analysis = SplitAnalysis(args.data, args)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/analysis/split.py", line 23, in init
self._init_inference_manager(args.polarization_error, hs)
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/analysis/base.py", line 108, in _init_inference_manager
im.model = self._model
File "smcpp/_smcpp.pyx", line 198, in smcpp._smcpp.PyInferenceManager.model.set
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/observe.py", line 19, in
f(self, *args, **kwargs)
File "smcpp/_smcpp.pyx", line 328, in smcpp._smcpp.PyOnePopInferenceManager.update
File "/sw/bioinfo/SMC++/1.15.2/rackham/lib/python3.8/site-packages/smcpp/model.py", line 297, in for_pop
assert self.model1.N0 == self.model2.N0
AssertionError