Hello, when I run the cv parameter calculation in the software,
”docker run --rm -v $PWD:/data terhorst/smcpp:latest cv -o /data/analysis/ 2.5e-9 /data/Chr01.smc.gz /data/Chr02.smc.gz / data/Chr03.smc.gz /data/Chr04.smc.gz /data/Chr05.smc.gz /data/Chr06.smc.gz /data/Chr07.smc.gz /data/Chr07.smc.gz /data/Chr08.smc.gz /data/Chr09.smc.gz /data /Chr10.smc.gz /data/Chr11.smc.gz /data/Chr12.smc.gz /data/Chr13.smc.gz /data/Chr14.smc.gz /data/Chr15.smc.gz /data/Chr16.smc.gz /data/ Chr17.smc.gz /data/Chr18.smc.gz /data/Chr19.smc.gz --cores 40、
, got the final model.best.json and model.final.json files, but the program still keeps running with the following error and keeps running, is the result still normal?
Hello, when I run the cv parameter calculation in the software, ”docker run --rm -v $PWD:/data terhorst/smcpp:latest cv -o /data/analysis/ 2.5e-9 /data/Chr01.smc.gz /data/Chr02.smc.gz / data/Chr03.smc.gz /data/Chr04.smc.gz /data/Chr05.smc.gz /data/Chr06.smc.gz /data/Chr07.smc.gz /data/Chr07.smc.gz /data/Chr08.smc.gz /data/Chr09.smc.gz /data /Chr10.smc.gz /data/Chr11.smc.gz /data/Chr12.smc.gz /data/Chr13.smc.gz /data/Chr14.smc.gz /data/Chr15.smc.gz /data/Chr16.smc.gz /data/ Chr17.smc.gz /data/Chr18.smc.gz /data/Chr19.smc.gz --cores 40、
, got the final model.best.json and model.final.json files, but the program still keeps running with the following error and keeps running, is the result still normal?
stack trace: /lib/x86_64-linux-gnu/libc.so.6 : ()+0x46210 /lib/x86_64-linux-gnu/libc.so.6 : abort()+0x213 /lib/x86_64-linux-gnu/libstdc++.so.6 : ()+0x9e951 /lib/x86_64-linux-gnu/libstdc++.so.6 : ()+0xaa47c /lib/x86_64-linux-gnu/libstdc++.so.6 : ()+0xaa4e7 /lib/x86_64-linux-gnu/libstdc++.so.6 : ()+0xaa799 /usr/local/lib/python3.8/dist-packages/smcpp-1.15.4.dev18+gca077da.d20210316-py3.8-linux-x86_64.egg/smcpp/_smcpp.cpython-38-x86_64-linux-gnu.so : PiecewiseConstantRateFunction<Eigen::AutoDiffScalar<Eigen::Matrix<double, -1, 1, 0, -1, 1> > >::average_coal_times() const+0xb1c /usr/local/lib/python3.8/dist-packages/smcpp-1.15.4.dev18+gca077da.d20210316-py3.8-linux-x86_64.egg/smcpp/_smcpp.cpython-38-x86_64-linux-gnu.so : NPopInferenceManager<1ul>::recompute_emission_probs()+0x737 /usr/local/lib/python3.8/dist-packages/smcpp-1.15.4.dev18+gca077da.d20210316-py3.8-linux-x86_64.egg/smcpp/_smcpp.cpython-38-x86_64-linux-gnu.so : InferenceManager::do_dirty_work()+0x3c /usr/local/lib/python3.8/dist-packages/smcpp-1.15.4.dev18+gca077da.d20210316-py3.8-linux-x86_64.egg/smcpp/_smcpp.cpython-38-x86_64-linux-gnu.so : InferenceManager::Estep(bool)+0xb9 /usr/local/lib/python3.8/dist-packages/smcpp-1.15.4.dev18+gca077da.d20210316-py3.8-linux-x86_64.egg/smcpp/_smcpp.cpython-38-x86_64-linux-gnu.so : ()+0x62ecf /usr/bin/python3() [0x503b29] /usr/bin/python3 : _PyEval_EvalFrameDefault()+0x8f6 /usr/bin/python3 : _PyFunction_Vectorcall()+0x1b6 /usr/bin/python3 : _PyEval_EvalFrameDefault()+0x8f6 /usr/bin/python3 : _PyEval_EvalCodeWithName()+0x26a /usr/bin/python3 : _PyFunction_Vectorcall()+0x393 /usr/bin/python3 : _PyEval_EvalFrameDefault()+0x8f6 /usr/bin/python3 : _PyFunction_Vectorcall()+0x1b6 /usr/bin/python3 : _PyEval_EvalFrameDefault()+0x71e /usr/bin/python3 : _PyEval_EvalCodeWithName()+0x26a /usr/bin/python3 : PyEval_EvalCode()+0x27 /usr/bin/python3() [0x67d5a1] /usr/bin/python3() [0x67d61f] /usr/bin/python3 : PyRun_FileExFlags()+0x9b /usr/bin/python3 : PyRun_SimpleFileExFlags()+0x17e /usr/bin/python3 : Py_RunMain()+0x212 /usr/bin/python3 : Py_BytesMain()+0x2d /lib/x86_64-linux-gnu/libc.so.6 : __libc_start_main()+0xf3 /usr/bin/python3 : _start()+0x2e
Thanks