Closed chriscrsmith closed 11 months ago
LGTM, but someone actually working on this code base should merge this? (@lntran26? @mufernando?)
I'll test this out to make sure it works before merging
@chriscrsmith I ran the full pipeline workflow and found that we also need to change workflows/stairway.py line 76 to make this compatible with the n_t part of the pipeline. The exact same change you did for ts2fs.py here would work. Once you add this change I think we can merge.
Thanks @lntran26 . How does this look?
Waiting on @chriscrsmith or @lntran26 to test this again to merge (unless that's been done)?
I've done the testing already and think it's ready to merge!
For issue #106
Changed one block of code in ts2fs.py, to deal with lists of mutation types within a DFE.
Tested by running sims with Mixed_K23 DFE (and also the Kim DFE), and running the dfe.snake pipeline. Example output below: