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popsim-consortium / analysis2

Analysis for the second consortium paper.
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Msmc parallel #94

Closed stsmall closed 1 year ago

stsmall commented 1 year ago

This allows msmc2 to run the different combinations of genome numbers, 2, 4, 6 ... etc, in parallel. Previous was a loop.

stsmall commented 1 year ago

it seems the last commit of n_t commented out all the local rules. Do we need this section?

andrewkern commented 1 year ago

I moved those out to the higher level Snakefile and commented them out in n_t.snake. That will mean that if you run the n_t workflow alone, i.e., using --snakefile, then those would not be local rules, which is usually okay?

andrewkern commented 1 year ago

@stsmall, now that we got #91 in, can you rebase this PR and we can get this all set to merge?