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popsim-consortium / stdpopsim

A library of standard population genetic models
GNU General Public License v3.0
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Add maize/corn (ZeaMay) #836

Open gregorgorjanc opened 3 years ago

gregorgorjanc commented 3 years ago

Description:

Have assembled working information and will go over it in the Grow the zoo hackhaton.

petrelharp commented 3 years ago

ambitious! =) love it.

gregorgorjanc commented 1 year ago

Adding some literature pointers:

2021: De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes https://www.science.org/doi/abs/10.1126/science.abg5289 --> genome

2017: Contributions of Zea mays subspecies mexicana haplotypes to modern maize https://www.nature.com/articles/s41467-017-02063-5 --> mutation rate

2021: Not so local: the population genetics of convergent adaptation in maize and teosinte https://www.biorxiv.org/content/10.1101/2021.09.09.459637v1.abstract --> demography

2021: Selective sorting of ancestral introgression in maize and teosinte along an elevational cline https://www.biorxiv.org/content/10.1101/2021.03.05.434040v3 --> demography

2017: The interplay of demography and selection during maize domestication and expansion https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1346-4 --> captures drop in Ne, but also recent growth!?