Papio Anubis - Githubissues

Name: Papio Anubis
Common name: Olive Baboon

Description: any other discussion or useful background? (optional)

Demographic information:

[] generation time in years: 8 Charpentier et al
[] "default" population size: 40000 Robinson et al

Chromosome structure:

Note: The assembly should be chromosome-level, i.e., not composed of thousands of scaffolds.

[] ensembl assembly ID or, if the assembly is not in Ensembl, a list of chromosomes with name and length (in bp)

1 218172882 2 193660750 3 184919515 4 182120902 5 173900761 6 167138247 7 161768468 8 140274886 9 127591819 10 126462689 11 125913696 12 123343450 13 106849001 14 106654974 15 91985775 16 91184193 17 74525926 18 72894408 19 72123344 20 50021108 X 142711496 Y 8309886

Recombination rates:

[] genetic map of recombination rates (as a hapmap or csv file)
[] genome-wide mean recombination rate (which will be used as the default)

Robinson et al Mean rho/bp = 3.55 ×10−3 Map also available from the same paper

Mutation rate:

[] genome-wide mean mutation rate 1e-8 (theta=0.0016) Robinson et al

Demographic model:

[] as a list of population sizes, growth rates, migration rates, etcetera. (optional)
[] citation

Other information:

These are things we don't currently use, but will want to use in the future:

[] sex determination system, and which chromosomes are the sex chromosome(s) Chromosome X, Y
[] ploidy Diploid

popsim-consortium / stdpopsim

Papio Anubis #864