Here is my simple test to run your BSMAP. Could you tell me why
"Segmentation fault" happened?
bsmap -a t1.fa -d t1.fa -o t1_test
t1.fa
-------------------------------------------------
>1
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>2
TAAAAAATTAAAATAAAAATAATGATTGAGGGAGTGTGGTT
>3
TTATTATTTATTATTTTTTTTTTATTTTTTTTTTATATTATTTTAGT
>4
TTTATTTTATATTTTATTGTTATTAAGAGGTAATATGTA
>5
TGTTATATGTTAGGTATTTTAGTGTAATTATAATAGTTTTTAATTTTGTT
The output is as following:
-------------------------------------------
Start at: Mon Feb 8 20:27:52 2010
Load in 5 db seqs, total size 224 bp. 0 secs passed
total_kmers: 1048576
Create seed table. 0 secs passed
Single read alignment:
Query: t3 Reference: t3 Output: t3_test
Segmentation fault
Best wishes,
Wei Qu
Original issue reported on code.google.com by quwe...@gmail.com on 8 Feb 2010 at 11:38
Original issue reported on code.google.com by
quwe...@gmail.com
on 8 Feb 2010 at 11:38