populationgenomics / analysis-runner

MIT License
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argument to remove filtered rows #619

Closed MattWellie closed 1 year ago

MattWellie commented 1 year ago

adds optional argument to the MT subsetting script that will remove filtered variants

Kinda important, as if MT data is exported directly to VCF, the required header fields for all the possible FILTERS values will not be added, meaning that downstream processes can't parse the data