populationgenomics / analysis-runner

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Remove gvcf_info from VCF export scripts #705

Closed MattWellie closed 3 weeks ago

MattWellie commented 2 months ago

Explicitly removes the gvcf_info field prior to VCF export, if it exists in the data set. This field contains a Struct/dict, so Hail can't map it to a valid VCF data type.

Adding to the HT and MT export, though a HT shouldn't have any genotypes/FORMAT data

No bumpversion commit here, this is scripts-only, and won't affect any analysisrunner content