161 base jinja template for report

[daniaki]

Proposed Changes

• Jinja2 templating with Bootstrap5 an Datatables

Checklist

• [x] Related Issue created
• [ ] Tests covering new change
• [x] Linting checks pass

[MattWellie]

Couple of things to investigate - Variant IDs aren't rendering as hyperlinks CSQ field is first-character only

(I'll check it out, just keeping note)

[MattWellie]

contains changes to 30+ files because I'm a sucker for a messy rebase. In addition to @daniaki 's templating changes, I've made a few additions -

• Rebased to take in the data format changes on Main
• Tooltips (thanks @danielreti); now the 'gold stars' for when a gene overlaps a panel relevant to a participant's phenotypes are literal gold stars. Hover over for the panel name & version, and click on the star to be taken to the relevant page in PanelApp
• The panel table also contains a hover-over tooltip hyperlink, but displays as the panel name. Maybe this one should have been a simple hyperlink, it won't make much difference in practice though
• Some columns have been rearranged, to prioritise the MOI as one of the most important columns

This could be extended in a couple of ways, but I think it's a good stopping point for now. Next move is to get this whole application bundled into a docker image, so I'd like this change in prior to that.

An example of the report this generates is here: https://test-web.populationgenomics.org.au/acute-care/reanalysis/2022-12-14/summary_output.html

Please note that this was part of some simulated retrospective work, so the 'forbidden genes' list would never be this long in regular usage