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populationgenomics / automated-interpretation-pipeline

Rare Disease variant prioritisation MVP
MIT License
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CSQ disconnect #273

Closed MattWellie closed 1 year ago

MattWellie commented 1 year ago

The CSQ content String is dodgy - the Header line is fixed here, but is filtered to contain only the fields present in the configuration file.

This means that the VCF content is out of sync with the VCF header. fix it.