Add a count for phenotype matched vars in report - Githubissues

populationgenomics / automated-interpretation-pipeline

Rare Disease variant prioritisation MVP

MIT License

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Add a count for phenotype matched vars in report #336

Open MattWellie opened 6 months ago

MattWellie commented 6 months ago

The table which counts unique/total/mean variants in each category per participant is dodgy af, fix the stats.

Comp-hets are ONE variant
Just make the whole thing WAY less complicated

Also, add a count of phenotype-matched variants (as shown by the tooltip)

Layer on top of this:

Count of phenotype-matched variants per gene
Count of unique categories per variant (i.e. proportion of variants with 3 different categories attached, 2, 1... etc.)