populationgenomics / automated-interpretation-pipeline

Rare Disease variant prioritisation MVP

MIT License

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"jvm jobs cannot be on lowmem machines" #341

Closed MattWellie closed 5 months ago

MattWellie commented 5 months ago

Fixes

"jvm jobs cannot be on lowmem machines" - this Hail filtering process is very lightweight, and can be run from a laptop, but there appears to be a hard restriction on machine type when running a Hail Query batch
https://batch.hail.populationgenomics.org.au/batches/430115/jobs/3

Proposed Changes

updates the init_batch call to use standard instead of lowmem machines