populationgenomics / automated-interpretation-pipeline

Rare Disease variant prioritisation MVP

MIT License

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Update Seqr minimiser script #358

Closed MattWellie closed 1 month ago

MattWellie commented 2 months ago

Fixes

Script which takes AIP results and minimises for Seqr doesn't 100% fit the expected API
Based on this test data which doesn't include 'independent' as an entity, and maps on Individual ID

Proposed Changes

Requires a Seqr mapping dictionary to convert CPG IDs to External Participant IDs
Removes the Independent attribute from models

This is on hold pending the successful ingestion of the data generated by the script in its current form

Checklist

[ ] Related Issue created
[ ] Tests covering new change
[ ] Linting checks pass

MattWellie commented 1 month ago

I think this has been done in a separate branch..