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populationgenomics / cpg-infrastructure

This repository is used to manage the infrastructure at the CPG
MIT License
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Increasing hail RAM to 4GB, pandas upgrade. #271

Closed milo-hyben closed 2 days ago

milo-hyben commented 3 days ago

Hail aggregate function needs more than 3GB for processing, older pandas has issue with the latest numpy, pinned to a different version.

codecov-commenter commented 3 days ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #271 +/- ## ======================================= Coverage ? 90.93% ======================================= Files ? 4 Lines ? 430 Branches ? 0 ======================================= Hits ? 391 Misses ? 39 Partials ? 0 ```

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github-actions[bot] commented 3 days ago

Test Results

24 tests   24 :white_check_mark:  0s :stopwatch:  1 suites   0 :zzz:  1 files     0 :x:

Results for commit 7bcb5ae2.