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populationgenomics
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cpg-infrastructure
This repository is used to manage the infrastructure at the CPG
MIT License
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Created metadata write group.
#229
milo-hyben
closed
6 months ago
1
Linking to new metamist-infra version.
#228
milo-hyben
closed
6 months ago
1
Updating metamist-infra dependency.
#227
milo-hyben
closed
6 months ago
1
Optimising seqr billing aggregation
#226
milo-hyben
closed
4 months ago
2
Use update cpg-utils path-names
#225
illusional
closed
7 months ago
1
Limit hail batches to max 50K jobs, aggregate any larger ones.
#224
milo-hyben
closed
7 months ago
1
Applying changes to BQ materialized view schema.
#223
milo-hyben
closed
7 months ago
1
Trying to fix BQ materialize view schema update.
#222
milo-hyben
closed
7 months ago
1
Seqr - memory optimisation - only add missing records to the list of entries to be updated.
#221
milo-hyben
closed
7 months ago
1
Fix billing aggregate issues
#220
milo-hyben
closed
7 months ago
1
Disable delete protection on BQ materialized views so we can update schema
#219
milo-hyben
closed
7 months ago
1
Allow internal users to access dataproc logs
#218
illusional
closed
7 months ago
1
Override resource key on secret creation
#217
illusional
closed
7 months ago
0
Add CODECOV_TOKEN to linting workflow
#216
illusional
closed
7 months ago
1
Aggregate changes for large batches
#215
milo-hyben
closed
7 months ago
4
Use new production-yaml path
#214
illusional
closed
7 months ago
1
Disable pulumi preview
#213
illusional
closed
7 months ago
1
Move Cromwell key to own dataset
#212
illusional
closed
7 months ago
2
Remove isort + fix pyproject to sort
#211
illusional
closed
8 months ago
3
Automatic hail user creation
#210
dancoates
closed
8 months ago
1
Update metamist/etl config with extra custom_audience_list.
#209
milo-hyben
closed
6 months ago
3
Infra changes to allow a development deploy
#208
dancoates
closed
8 months ago
2
Fix pluralisation and improve seqr error message
#207
illusional
closed
9 months ago
2
Dynamic group membership deploy fixes
#206
illusional
closed
9 months ago
2
Dynamic group membership provider
#205
dancoates
closed
9 months ago
2
Improve memory efficiency of billing aggregators
#204
illusional
closed
9 months ago
3
Support missing buckets in storage_visualisation bot
#203
illusional
closed
9 months ago
2
Add read access for metamist to list objects and object metadata in dataset buckets
#202
dancoates
closed
9 months ago
2
Increase RAM for hail aggregate function (from 2GB to 2.5GB)
#201
milo-hyben
closed
9 months ago
3
Metamist ETL configuration take II
#200
illusional
closed
9 months ago
2
Fix typing for hail batch
#199
illusional
closed
9 months ago
1
Billing new aggregate table
#198
milo-hyben
closed
9 months ago
3
Enable ruff linter and fix as many linting errors as possible
#197
illusional
closed
9 months ago
2
Improve handling of invoice month edges
#196
illusional
closed
9 months ago
2
Disallow deletion of GCP buckets for MUTATE bucket membership type (part 2)
#195
dancoates
closed
9 months ago
1
Disallow deletion of GCP buckets for MUTATE bucket membership type (part 1)
#194
dancoates
closed
9 months ago
5
Add release bucket to storage config toml
#193
illusional
opened
10 months ago
0
Skip deleting GCP projects
#192
illusional
closed
10 months ago
2
Add job name to hail batch billing
#191
illusional
closed
10 months ago
2
Improve documentation
#190
illusional
closed
10 months ago
3
Add isort + bump pre-commit versions
#189
illusional
closed
10 months ago
2
Use a per-collaborator service account
#188
illusional
opened
10 months ago
0
Update requirements to try and fix auth issue
#187
illusional
closed
11 months ago
1
Persist metamist members to state, so we stop rerunning
#186
illusional
closed
11 months ago
2
Add internal users to all internal batch projects
#185
illusional
closed
11 months ago
2
Refactor key generation logic in hail and seqr
#184
illusional
closed
11 months ago
2
Revert "Give billing.coordinator_machine_account billing.viewer role"
#183
illusional
closed
1 year ago
2
Give billing.coordinator_machine_account billing.viewer role
#182
milo-hyben
closed
1 year ago
2
Expand prop-map range based on batch data + id insertion range
#181
illusional
closed
1 year ago
2
Add dataset override for seqr GCP
#180
illusional
closed
1 year ago
1
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