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populationgenomics / images

Reusable single-software docker images
MIT License
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Ensure dill etc are installed for Python 3.10 #121

Closed jmarshall closed 10 months ago

jmarshall commented 10 months ago

Final fix to make a samtools image that Hail can use for its Python jobs: hail needs to run dill using the same Python version as the driver image.

This image has been built into …/images-dev and successfully used for a test run of CRAM reheadering: see https://batch.hail.populationgenomics.org.au/batches/430054.

jmarshall commented 10 months ago

I was somewhat expecting that image not to have a pip command installed, but it does. And rather to my surprise, pip list reports dill as having been installed by pip — probably because the conda-forge build script did a pip install in the process of making the package tarball.

So in the end there's really no difference here (at least for a noarch python package). The files installed are the same, they've just come from unpacking a conda package rather than installing an sdist or wheel from pypi.