populationgenomics / joint-calling

Sample and variant QC, based on https://github.com/broadinstitute/gnomad_qc
MIT License
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Fix Unit Tests #77

Closed vivbak closed 2 years ago

vivbak commented 2 years ago

The issue was the project that test_upload_processor.py depended on was deleted, as the SM DB was restructured into SM_PRODUCTION and SM_DEVELOPMENT. The initial plan was to use a test project within the development instance. This relied on the ability to add environment variables to the analysis-runner 262. However, the decision was then made to instead use fewgenomes-test on the production instance.