Update PCA plots, fix PED file, check existence flags

populationgenomics / joint-calling

Sample and variant QC, based on https://github.com/broadinstitute/gnomad_qc

MIT License

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Closed vladsavelyev closed 3 years ago

vladsavelyev commented 3 years ago

Update PCA plots
Generate fixed PED file
Add --check-existence flag to to skip checking input file existence and trust SM DB
Use options to pass age and sex metadata files