Expose the scatter_count parameter when genotyping

populationgenomics / production-pipelines

Genomics workflows for CPG using Hail Batch

MIT License

2 stars 0 forks source link

Expose the scatter_count parameter when genotyping #336

Closed KatalinaBobowik closed 1 year ago

KatalinaBobowik commented 1 year ago

The scatter_count parameter, used to control chunking for the genotyping stage, is currently hardcoded to 50. We should expose this as a configurable parameter, as we may want to adjust this for processing exomes vs genomes etc.

KatalinaBobowik commented 1 year ago

This is now a configurable input, added into [workflow][scatter_count_genotype] with 50 as a default