populationgenomics / production-pipelines

Genomics workflows for CPG using Hail Batch
MIT License
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Error when not specifying large_cohort.output_versions #737

Closed michael-harper closed 4 months ago

michael-harper commented 4 months ago

LC pipeline needs to have large_cohort.output_versions for certain stages otherwise dictionary .get() method won't work. See failed batch.

If the field is not populated then it should default to the workflow[output_version] name