populationgenomics / production-pipelines

Genomics workflows for CPG using Hail Batch
MIT License
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Use AIP report splitting, config dependent #745

Closed MattWellie closed 1 month ago

MattWellie commented 1 month ago

Utilises the functionality in https://github.com/populationgenomics/automated-interpretation-pipeline/pull/403

An example config structure would be:

[workflow.report_splitting]
PROJECT = 2

Meaning that reports generated in project PROJECT would be generated as normal, then 2 smaller sub-reports would be generated.

This granularity should enable each project to be either published un-split, or to be split into an arbitrary number of partitions, depending on scale of cohort.