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populationgenomics / production-pipelines

Genomics workflows for CPG using Hail Batch
MIT License
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WALRUS! #756

Closed MattWellie closed 1 month ago

MattWellie commented 1 month ago

Previous code:

if spicy_vcf := query_for_spicy_vcf(cohort.analysis_dataset.name) is None:
   ...

result - if a file was returned, spicy_vcf is set to False, instead of the file name

Changed to: 

if (spicy_vcf := query_for_spicy_vcf(cohort.analysis_dataset.name)) is None:
    ...

result - if a file was returned, spicy_vcf will, in fact, be the spicy vcf 🌶️

MattWellie commented 1 month ago

Semi on-hold, the query to find this VCF file is currently killing metamist, so we may have some debugging to do