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populationgenomics / production-pipelines

Genomics workflows for CPG using Hail Batch
MIT License
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Bam2cram, corrected #769

Closed MattWellie closed 1 month ago

MattWellie commented 1 month ago

The import was from stages, leading to 

ModuleNotFoundError: No module named 'cpg_workflows.stages.bam_to_cram'

the correct import is stages.seqr_loader_long_read

EddieLF commented 1 month ago

Thanks @MattWellie! An oversight on my part 🕶️