Open vivbak opened 1 month ago
Failing batch link: https://batch.hail.populationgenomics.org.au/batches/454658/jobs/1
Can be repro'd with the following launch.json
{ "name": "SEQR loader", "type": "debugpy", "request": "launch", "program": "${workspaceFolder}/main.py", "justMyCode": false, "args": [ "seqr_loader" ], "python": "path_to_python", "console": "integratedTerminal", "env": { "SM_ENVIRONMENT": "", "CPG_CONFIG_PATH": "gs://path_to_config_from_failed_batch", "PYTHONPATH": "${workspaceFolder}/seqr-loading-pipelines" } }
Seems to be a pickling issue, though the latest attempt at resolving has not resolved the issue https://github.com/populationgenomics/production-pipelines/pull/772
First reported by @EddieLF
Failing batch link: https://batch.hail.populationgenomics.org.au/batches/454658/jobs/1
Can be repro'd with the following launch.json
Seems to be a pickling issue, though the latest attempt at resolving has not resolved the issue https://github.com/populationgenomics/production-pipelines/pull/772
First reported by @EddieLF