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populationgenomics / saige-tenk10k

Hail batch pipeline to run SAIGE on CPG's GCP
MIT License
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more variants no weight name #133

Closed annacuomo closed 3 weeks ago

annacuomo commented 3 weeks ago

Latest failure: https://batch.hail.populationgenomics.org.au/batches/483622/jobs/2 We think that this line is the issue:

if ((sum(outList$NumUltraRare_GroupVec) + sum(outList$NumRare_GroupVec)) > 0) {

so trying adding all variants back in, but modifying the weight name

annacuomo commented 3 weeks ago

running: https://batch.hail.populationgenomics.org.au/batches/483632/jobs/1