search

populationgenomics / seqr

web-based analysis tool for rare disease genomics
GNU Affero General Public License v3.0
3 stars 1 forks source link

Automation improvements #178

Closed illusional closed 1 year ago

illusional commented 1 year ago

Aim: single update endpoints where possible

illusional commented 1 year ago

Sync-seqr script has been updated with these changes, and is not a lot more stable: https://github.com/populationgenomics/sample-metadata/pull/283

This is now a prime target for moving this functionality into the server for metamist.

illusional commented 1 year ago

That's definitely my biggest concern, I've tried to write it in a way that minimises code duplication balancing touching existing code. FWIW, we haven't seen conflicts in the existing (original -> original + base) refactor to support the original SA endpoints.

I'd rather the conflict, because otherwise we could miss important changes to the format.