Closed MattWellie closed 6 months ago
For GATK-SV we're using whole-cohort calling. For gCNV we're using batch calling.
For gCNV a full callset may span several VCF files/MatrixTables
Permit the addition of multiple separate VCFs in the ValidateMOI task
~Maybe all input data from the same source should be done in the same hail runtime to prevent clashing checkpoints etc.~
That shouldn't matter, SV results don't use a checkpoint... yet. Maybe if we got more categories involved.
Updated... might work, who knows
For GATK-SV we're using whole-cohort calling. For gCNV we're using batch calling.
For gCNV a full callset may span several VCF files/MatrixTables
Permit the addition of multiple separate VCFs in the ValidateMOI task
~Maybe all input data from the same source should be done in the same hail runtime to prevent clashing checkpoints etc.~
That shouldn't matter, SV results don't use a checkpoint... yet. Maybe if we got more categories involved.