populationgenomics / talos

Rare Disease variant reanalysis tool

MIT License

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Truncate and source column #398

Closed MattWellie closed 5 months ago

MattWellie commented 5 months ago

Fixes

Super long indels are ruining the report formatting

Proposed Changes

Inserts some logic to detect ref or alt > 10bp, and changes the long LOLOLOLOLOLOLOLOLOLOLOLOLOLOLOL>LOL to ins 34bp
Adds a liftover method for ReportData
Adds a Source column (SmallVariant or StructuralVariant) to make the two variant types clear (the INS Nbp display is already in use for SVs)
Moves some logic out of the Jinja template (probably doable in Jinja instead, but looks messy)