populationgenomics / talos

Rare Disease variant reanalysis tool

MIT License

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Never reuse Hail checkpoints #402

Closed MattWellie closed 5 months ago

MattWellie commented 5 months ago

Fixes

Code so far has re-used checkpoints by default. That has lead to numerous dodgy results where input files/panels were fixed, but the re-run picked up the previous run's content

Proposed Changes

Re-running is now not the default
Can be overridden in config

Checklist

[ ] Related Issue created
[ ] Tests covering new change
[ ] Linting checks pass