populationgenomics / talos

Rare Disease variant reanalysis tool
MIT License
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Add entrypoints #413

Closed MattWellie closed 4 months ago

MattWellie commented 4 months ago

Fixes

Proposed Changes

Checklist

MattWellie commented 4 months ago

like checkpointing changes

This was bundled in just to reduce the number of CLI args, a slight behaviour change. We're doing everything in a container and throwing the checkpoint away, so removing the need to pass a specific path. This behaviour might return when we need to support other environments where they might want to recover from a partially-complete run using a persisted checkpoint

(passing a path specifically in the attached storage drive was also supposed to help the out-of-space hail issue, but it wasn't effective)