populationgenomics / talos

Rare Disease variant reanalysis tool
MIT License
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Correction to report splitting #420

Closed MattWellie closed 3 months ago

MattWellie commented 3 months ago

Fixes

Second issue - #421

In the Hail analysis of SV data, the process quits if there's no overlap between the PED and VCF

This has caused recurrent failures where a participant has both Exome and Genome results - only the exome data is being retained in the pedigree, so there appears to be no overlap with the exome-only CNV data

Proposed Changes

Checklist

MattWellie commented 3 months ago

also took this opportunity to delete more linting exclusions