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populationgenomics
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tob-wgs
Tasmanian Ophthalmic Biobank Whole Genome Sequencing Project
MIT License
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Move Dragmap Parity Results To Analysis Bucket
#187
michael-harper
closed
1 month ago
0
Dragmap Parity: Fixing 'None' samples showing up
#186
michael-harper
closed
1 month ago
0
Printing out active and inactive keyed tables
#185
michael-harper
closed
1 month ago
0
Dragmap Parity: No need to split nagim_mt
#184
michael-harper
closed
1 month ago
0
Dragmap Parity: Correcting samples-to-skip Click option
#183
michael-harper
closed
1 month ago
0
Dragmap Parity: Skipping duplicate samples
#182
michael-harper
closed
1 month ago
0
Removing '-main' from project during graphql query
#181
michael-harper
closed
1 month ago
0
Adding logging
#180
michael-harper
closed
1 month ago
0
Fixing output prefix to work on main
#179
michael-harper
closed
1 month ago
0
Adding dragmap parity checking script
#178
michael-harper
closed
1 month ago
1
Separate datasets tob bioheart enrichment
#177
amyminiter
closed
4 months ago
0
Linting failure in GitHub after passing pre-commit validation locally
#176
amyminiter
closed
4 months ago
4
Update logic in append_dictionaries()
#175
amyminiter
closed
4 months ago
0
Enrich tob/bioheart metadata with sequencing dates
#174
amyminiter
closed
4 months ago
1
Update linting versions, add ruff + cpg-id-checker
#173
illusional
closed
8 months ago
0
Remove files referenced cpg tob ids
#172
michael-harper
closed
8 months ago
0
Remove files
#171
michael-harper
closed
8 months ago
1
Revert "Making it multithreaded"
#170
michael-harper
closed
8 months ago
3
Making it multithreaded
#169
michael-harper
closed
8 months ago
0
Copy nagim subset to test (making it multithreaded)
#168
michael-harper
closed
8 months ago
0
Copy subset of nagim gvcf's to test bucket
#167
michael-harper
closed
8 months ago
0
copy input files to test
#166
annacuomo
closed
1 year ago
0
Create json1.py
#165
hopedisastro
opened
1 year ago
0
update to use GCS files without copying
#164
MattWellie
closed
1 year ago
0
release minified CRAM data
#163
MattWellie
closed
1 year ago
0
Open chromatin annotate
#162
annacuomo
closed
1 year ago
0
avoid write directly to release
#161
MattWellie
closed
1 year ago
0
forgot to actually run the jobs
#160
MattWellie
closed
1 year ago
0
script for subsetting requested CRAM files
#159
MattWellie
closed
1 year ago
0
Create copy_atac_annos.sh
#158
annacuomo
closed
1 year ago
0
Explore genes
#157
annacuomo
closed
1 year ago
1
Set longer timeout to initialize VEP on Dataproc
#156
lgruen
closed
1 year ago
0
Fix VEP script instructions
#155
lgruen
closed
1 year ago
0
Use gs://cpg-common-main/hail_dataproc instead of gs://cpg-common-main/references/hail_dataproc
#154
lgruen
closed
1 year ago
0
Use gs://cpg-common-main/references instead of gs://cpg-references
#153
lgruen
closed
1 year ago
0
Update genotype mt to be in analysis bucket for exploration/debugging
#152
KatalinaBobowik
closed
1 year ago
0
Copy geneloc files 7 and 22
#151
KatalinaBobowik
closed
1 year ago
0
fix CI
#150
MattWellie
closed
1 year ago
0
Create README.md
#149
annacuomo
closed
1 year ago
1
count variants
#148
MattWellie
closed
1 year ago
0
Count variants
#147
annacuomo
closed
1 year ago
0
Check whether checkpointing triggers the issue
#146
lgruen
closed
1 year ago
0
Fix typo in repro case
#145
lgruen
closed
1 year ago
0
Make sure we can repro with checkpoint + read
#144
lgruen
closed
1 year ago
0
Test if we can reproduce the crash with `naive_coalesce` directly
#143
lgruen
closed
1 year ago
0
Add repro case for the Hail team
#142
lgruen
closed
1 year ago
0
Add in alleles info in order to intersect with mt
#141
KatalinaBobowik
closed
2 years ago
0
Use `highmem` worker machines for conditional analysis to avoid OOM
#140
lgruen
closed
2 years ago
0
Update GTF column name to match data summary file
#139
KatalinaBobowik
closed
2 years ago
0
Add suggestions as made by Daniel E and increase call rate
#138
KatalinaBobowik
closed
2 years ago
0
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