Tested and working in a locally hosted curation portal.
These changes will allow four new fields to be handled:
Field
Description
Data Type
AD
Allelic depths
array[array[int, int]]
AD_all
Allelic depths for all ALT genotypes
array[array[int, int]]
DP_all
Read depths for all ALT genotypes
array[int]
GQ_all
Genotype quality for all ALT genotypes
array[int]
The new fields have been added to the Variant Django model, the variants-schema.json relied on by the frontend, and the VariantData.js page where variant curation happens. A Django migration file has been created to modify the schema.
Example of how the new fields will appear for a variant in the input JSON:
Tested and working in a locally hosted curation portal.
These changes will allow four new fields to be handled:
AD
array[array[int, int]]
AD_all
array[array[int, int]]
DP_all
array[int]
GQ_all
array[int]
The new fields have been added to the
Variant
Django model, thevariants-schema.json
relied on by the frontend, and theVariantData.js
page where variant curation happens. A Django migration file has been created to modify the schema.Example of how the new fields will appear for a variant in the input JSON:
Here is how the variant curation page looks with the new fields: