Starting point for browsing to the data to be converted in mri_conv

[servoz]

Currently the starting point for browsing to the data to be converted is the folder where MRIManager.jar is located. It could be more comfortable to start from the project folder previously defined by the user. So a nice thing should be to pass this path during the call to the mri_conv app.

Current call from mia:

subprocess.call(['java', '-Xmx4096M', '-jar',
                                      config.get_mri_conv_path(),
                                      '[ExportNifti] ' + os.path.join(
                                      self.project.folder, 'data',
                                      'raw_data'),
                                      '[ExportToMIA] PatientName-StudyName-'
                                      'CreationDate-SeqNumber-Protocol-'
                                      'SequenceName-AcquisitionTime',
                                      'CloseAfterExport'])

Expected call from mia, something like:

subprocess.call(['java', '-Xmx4096M', '-jar',
                                      config.get_mri_conv_path(),
                                      projects_directory ,
                                      '[ExportNifti] ' + os.path.join(
                                      self.project.folder, 'data',
                                     'raw_data'),
                                     '[ExportToMIA] PatientName-StudyName-'
                                     'CreationDate-SeqNumber-Protocol-'
                                     'SequenceName-AcquisitionTime',
                                     'CloseAfterExport'])

[montigno]

Ok, I propose to put as an option '[ProjectsDir] '+ projects_directory .

[servoz]

Great !

[montigno]

It's done! (with version 19.3.0a), tell me if it works

[servoz]

Thanks ! We are testing all this and making all the necessary changes on mia's side ASAP

[servoz]

It's seems to work fine ! Thanks