This branch is using populse_db v1 and CapsulEngine.
Another branch is using populse_db v2: populse_db2_capsulengine.
So we should merge either this PR, if #165 is not merged before this one, or the other populse_db2_capsulengine branch (PR coming soon), but not both.
The capsulengine branch replaces many configuration / initialization / completion / execution / iteration features with the Capsul system. The work is not finished but it allows to run nipype, standard Capsul, or MIA processes and pipeline, each performing its initialization and completion, and gets settings.
Execution is done through soma-workflow (each job in a separate process, embarking its configuration options).
This branch is using populse_db v1 and CapsulEngine. Another branch is using populse_db v2: populse_db2_capsulengine. So we should merge either this PR, if #165 is not merged before this one, or the other populse_db2_capsulengine branch (PR coming soon), but not both.
The capsulengine branch replaces many configuration / initialization / completion / execution / iteration features with the Capsul system. The work is not finished but it allows to run nipype, standard Capsul, or MIA processes and pipeline, each performing its initialization and completion, and gets settings. Execution is done through soma-workflow (each job in a separate process, embarking its configuration options).