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poruloh / Eagle

Haplotype phasing software
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genotype likelihood input format #24

Open sahwa opened 5 years ago

sahwa commented 5 years ago

I was wondering whether it is likely that you will ever introduce a feature allowing data to be inputted in genotype likelihood format, in addition to hard genotype calls? This would be very useful in phasing samples that are of variable coverage. Currently the only other phasing program which implements this is Beagle4.1, which doesn't scale well with 1000s of samples.

poruloh commented 5 years ago

It's certainly on my list of features I would like to add someday, but I unfortunately don't expect to have bandwidth anytime soon.