ERROR: Failed to allocate 18446744073709551596 bytes

poruloh / Eagle

Haplotype phasing software

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Closed shafayetrahat closed 1 year ago

shafayetrahat commented 2 years ago

Command to reproduce

eagle --vcf NA20298_snps_chr2.vcf.gz --geneticMapFile genetic_map_hg19_withX.txt.gz --outPrefix phased_chr2 --chrom 2 Gives me error

Phasing samples 1-1 WARNING: Sample 1 (1-indexed) has a het count of 0 ERROR: Failed to allocate 18446744073709551596 bytes What causes the error?

tgong1 commented 1 year ago

Hi,

I'm recently using eagle and getting the same error message. Have you sorted this out?

Thank you for the help! Tingting

AkshajD commented 1 year ago

I am also running into this error. @shafayetrahat has it been resolved for you, and if so, any tips you can share?

Thanks a lot, Akshaj

shafayetrahat commented 1 year ago

Sorry, I couldn't reply early. I couldn't solve it and forced to use SHAPEIT instead of EAGLE.