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poseidonchan / TAPE

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
https://sctape.readthedocs.io/
GNU General Public License v3.0
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Popping Figure #10

Open alexdray86 opened 1 year ago

alexdray86 commented 1 year ago

Dear Sir or Madam,

I am performing a benchmarking of deconvolution methods and I need to run TAPE and Scaden many times on multiple datasets. I wanted to know if there is an option to suppress the figures to pop up on my screen ? I am running it through a python script launched on the terminal.

If the option does not exist, may I suggest to add it ?

Thank you very much for your impressive method !

Best,

Alexandre Coudray

poseidonchan commented 1 year ago

Hi Alexandre:

Thanks for using TAPE! So, I design it to show a concept of how the MMS or SS transform the data distribution. For you convenicne, I suggest you find the root path of the package you installed and then modify the code in the utils.py. You can just shut off the plot function (by adding # in the beginning of the line).

Screen Shot 2023-06-24 at 4 32 58 PM

Line 117, 118, 130 and 131 make the plot.

Regards, Yanshuo