Plot density issue for >1 gene and the projection output

powellgenomicslab / Nebulosa

R package to visualize gene expression data based on weighted kernel density estimation

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Plot density issue for >1 gene and the projection output #26

Open ganpha opened 4 months ago

ganpha commented 4 months ago

Hello, I'm using Seurat v5 with an RDS object obtained by using the BBKNN integration protocol. The Plot_density function does not generate a plot for more than one gene, and for a single gene, it produces a t-SNE projection instead of a UMAP projection. Please advise on how to resolve this issue? Thank you for any help!