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poyuliu / KTU

KTU: K-mer-based taxonomic clustering algorithm improves biological relevance in microbiome associated study
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KTU installation failed #4

Closed Ufungi closed 2 years ago

Ufungi commented 2 years ago

Hi Po-Yu,

I'm Shinnam Yoo, a beginner in microbiome analysis

After the recent update, I failed to install KTU with the following error comments:

Error: Failed to install 'unknown package' from GitHub:
  Line starting 'Roxyg ...' is malformed!

I tried the following codes for installation:

install_github("poyuliu/KTU")
remotes::install_github("poyuliu/KTU")

Sincerely, Shinnam Yoo

poyuliu commented 2 years ago

Hi Shinnam,

Thank you for trying out our package!

I've searched for the error message on several forums. Sometimes install_github function of the devtools package got that error due to a failed connection to GitHub. The remotes package would be an alternative for installing packages. In addition, please check the internet connection without using Proxy. Or you may try installing the package with this command:

library(devtools)
devtools::install_github("poyuliu/KTU", upgrade=FALSE)

Cheers, Po-Yu

Ufungi commented 2 years ago

Sorry for the late response.

The installation of KTU package was successful after the reinstallation of R and Rstudio

Thank you.

Sincerely, Shinnam Yoo