Unable to save plot data in with current versions of R and SK Ana

[conrjk]

Hello there!

I was previously using SK-Ana version 3.0beta and R version 4.2.3 and the code would run, except for the ambiguity tab. The data in this case exports in a .csv file inside a .zip file.

I now need to calculate the ambiguity, and I'm not a coder so I have tried installing several combinations of R and SK-Ana. The best I have achieved so far is the combination of R v4.0 and SK-Ana v3.4, in which the entire program runs, except the Download Save function. Whether I click Save, or Ctrl + Click Save, it tries to save an html file, but doesn't save anything at all. Do you have any suggestions to resolve this?

Thanks so much!

[ppernot]

Hi,

first of all, thanks for using SK-Ana !

This version management is a nightmare ! I am not even sure that I would be able to reproduce this problem on my platform... This is why I created a docker version in which ererything is kept compatible. Fo SK-Ana, I did not make the transition to R 4.x and kept to R3.6 to avoid disruptive changes in the code.

I would therefore strongly advise you to try the latest docker version first. Let us see from there if there is any bug in there that I can reproduce and correct.

To run the container: 1- Install Docker 2- Type the following commands in a terminal: docker run -d -p 3840:3840 --name skana ppernot1/skana 3- Access SK-Ana at http://localhost:3840/ in your favorite browser

Please let me know your success or unsuccess ;-)

Pascal

[conrjk]

Thank you so much for your prompt reply! It's a wonderful program, and very easy to use once installed, but my ineptitude at R coding seems to be holding me back from using it at its full potential.

I have downloaded and run the docker program as you suggested. The program works, but seems to disconnect often before I can run my data (the screen grays out). When it does this, Docker shows it is still connected, but if I restart the session it will just load perpetually. One time I got it to fully run but there was still a problem with the ambiguity tab.When I try to run Ambiguity, I get two errors in the browser version: could not open file '/tmp/RtmpqJi84U/file11e94f716.png there is no package called ‘bslib’

Jacy

On Thu, 11 May 2023 at 00:28, Pascal PERNOT @.***> wrote:

Hi,

first of all, thanks for using SK-Ana !

This version management is a nightmare ! I am not even sure that I would be able to reproduce this problem on my platform... This is why I created a docker version in which ererything is kept compatible. Fo SK-Ana, I did not make the transition to R 4.x and kept to R3.6 to avoid disruptive changes in the code.

I would therefore strongly advise you to try the latest docker version first. Let us see from there if there is any bug in there that I can reproduce and correct.

To run the container: 1- Install Docker https://www.docker.com/products/docker-desktop 2- Type the following commands in a terminal: docker run -d -p 3840:3840 --name skana ppernot1/skana 3- Access SK-Ana at http://localhost:3840/ in your favorite browser

Please let me know your success or unsuccess ;-)

Pascal

— Reply to this email directly, view it on GitHub https://github.com/ppernot/SK-Ana/issues/1#issuecomment-1543409632, or unsubscribe https://github.com/notifications/unsubscribe-auth/A7YDVZGFJAAWXTAFBI6YWTDXFSBIFANCNFSM6AAAAAAX5PZVO4 . You are receiving this because you authored the thread.Message ID: @.***>

[conrjk]

I also tried to uninstall everything and just run SK Ana version 3.4 with R version 3.6.3 so that it would match the build version. The program appears to run correctly, except that I'm unable to save my data. When I go to the downloads tab and press "Save", it tries to get me to save a .htm file, and when I press save, nothing appears in the chosen directory. With my previous SK Ana version 3.0 it saved as a .zip file, and this worked. I then tried to install SK Ana version 3.0, and the program will open but when I try to Run the ALS fit, I get "Error: Scan() expected 'a real', got 'i>> ¿ 300".

Not sure how to resolve either issue...

Jacy

On Thu, 11 May 2023 at 08:09, Jacy Conrad @.***> wrote:

Thank you so much for your prompt reply! It's a wonderful program, and very easy to use once installed, but my ineptitude at R coding seems to be holding me back from using it at its full potential.

I have downloaded and run the docker program as you suggested. The program works, but seems to disconnect often before I can run my data (the screen grays out). When it does this, Docker shows it is still connected, but if I restart the session it will just load perpetually. One time I got it to fully run but there was still a problem with the ambiguity tab.When I try to run Ambiguity, I get two errors in the browser version: could not open file '/tmp/RtmpqJi84U/file11e94f716.png there is no package called ‘bslib’

Jacy

On Thu, 11 May 2023 at 00:28, Pascal PERNOT @.***> wrote:

Hi,

first of all, thanks for using SK-Ana !

This version management is a nightmare ! I am not even sure that I would be able to reproduce this problem on my platform... This is why I created a docker version in which ererything is kept compatible. Fo SK-Ana, I did not make the transition to R 4.x and kept to R3.6 to avoid disruptive changes in the code.

I would therefore strongly advise you to try the latest docker version first. Let us see from there if there is any bug in there that I can reproduce and correct.

To run the container: 1- Install Docker https://www.docker.com/products/docker-desktop 2- Type the following commands in a terminal: docker run -d -p 3840:3840 --name skana ppernot1/skana 3- Access SK-Ana at http://localhost:3840/ in your favorite browser

Please let me know your success or unsuccess ;-)

Pascal

— Reply to this email directly, view it on GitHub https://github.com/ppernot/SK-Ana/issues/1#issuecomment-1543409632, or unsubscribe https://github.com/notifications/unsubscribe-auth/A7YDVZGFJAAWXTAFBI6YWTDXFSBIFANCNFSM6AAAAAAX5PZVO4 . You are receiving this because you authored the thread.Message ID: @.***>

[ppernot]

OK, thanks for taking the time to make these tests.

I will try to reproduce the error in the docker case and will get back to you asap...

Pascal

[ppernot]

Could you provide me with a data matrix for which you have the problem ?

[conrjk]

Yes, I'm trying to fit the attached .txt data, with the fixed spectral shapes from the .csv file.

Jacy

On Thu, 11 May 2023 at 08:37, Pascal PERNOT @.***> wrote:

Could you provide me with a data matrix for which you have the problem ?

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