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prabhakarlab / Banksy

BANKSY: spatial clustering
https://prabhakarlab.github.io/Banksy
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There is an M parameter in RunBanksy function in the analysis code but not in the manual. #21

Closed yuanjiao123 closed 8 months ago

yuanjiao123 commented 8 months ago

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jleechung commented 8 months ago

Hi @yuanjiao123, thanks for raising this issue. Could you re-install our fork of the SeuratWrappers package:

remotes::install_github('jleechung/seurat-wrappers@feat-aft')

The function documentation should be updated: https://github.com/jleechung/seurat-wrappers/blob/feat-aft/man/RunBanksy.Rd

with corresponding vignette here: https://github.com/jleechung/seurat-wrappers/blob/feat-aft/docs/banksy.md

To run BANKSY with M=0, you can set use_agf=FALSE in RunBanksy.